The Clones are reported to be building their own Molentic Tuul space cruisers, reverse engineering the Utrek type as they did with the Kalahati Tuul. Its not thought if they will try and update the design of their own built ships (as they did with the Kalahati Tuul 2). One source states funding has been agreed for 20 of these new ships.
The Clones are working with the Rectoids and may try and incorporate Rectoid technology or at least experience in their design (the Rectoids have experience fighting the Utrek). The Utrek reaction is unknown but if the experience of the Kalahati Tuul is any guide they do not seem to be bothered about this sort of thing.